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Software and scripts - overview

  • UGbS-Flex Pipeline

    UGbS-flex is a versatile pipeline for the analysis of GBS data irrespective of a species' ploidy level, breeding system or availability of a reference genome sequence.  Both single-end reads and paired-end reads can be used as input.  The pipeline combines publicly available software with in-house python and perl scripts.  All scripts are available for download from our website.

  • Scripts used in Genetic Mapping

    In collaboration with Russell Malmberg, we have upgraded Lincoln and Lander's time-tested mapping program 'MAPMAKER' to run more efficiently in a Windows Command Prompt Environment.  We have also developed scripts to semi-automate some of the most time-consuming steps in the MAPMAKER mapping process.  The upgraded version of MAPMAKER and the mapping scripts are available for download from our website.